Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs2260889 chr13:114141062 C/A 4.05E-12 176 24.1 30.33 3.32 KM Plot
PCPG rs2261007 chr13:114181316 A/T 4.67E-12 176 24.17 30.63 3.32 KM Plot
PCPG rs2261009 chr13:114181169 A/G 4.67E-12 176 24.17 30.63 3.32 KM Plot
PCPG rs2261120 chr13:114146893 A/G 1.14E-7 178 3.7 29.57 24.17 KM Plot
PCPG rs2261232 chr13:114150592 G/A 5.27E-12 176 24.23 29.57 3.32 KM Plot
PCPG rs2261233 chr13:114150433 C/G 5.27E-12 176 24.23 29.57 3.32 KM Plot
PCPG rs2261237 chr13:114150358 A/G 5.27E-12 176 24.23 29.57 3.32 KM Plot
PCPG rs2261241 chr13:114149891 T/C 5.27E-12 176 24.23 29.57 3.32 KM Plot
PCPG rs2261243 chr13:114149792 A/G 5.27E-12 176 24.23 29.57 3.32 KM Plot
PCPG rs2261244 chr13:114149739 T/C 5.27E-12 176 24.23 29.57 3.32 KM Plot
PCPG rs2261266 chr13:114149534 C/A 5.27E-12 176 24.23 29.57 3.32 KM Plot
PCPG rs2261267 chr13:114149518 G/A 0.000434 175 24.38 28.95 3.7 KM Plot
PCPG rs2261269 chr13:114149460 A/G 5.27E-12 176 24.23 29.57 3.32 KM Plot
PCPG rs2261372 chr13:114179304 T/C 4.67E-12 177 24.17 30.33 3.32 KM Plot
PCPG rs2261891 chr13:114174755 A/T 0.000389 178 24.1 29.5 3.7 KM Plot